This table also includes imaging data handling and analysis tools beyond calcium imaging and will be updated going forward.
Also found at https://bahanonu.com/brain/imaging_tools/ or https://github.com/bahanonu/imaging_tools.
Several of the approaches described, such as fibrosis inhibition, are applicable to preparations and experiments beyond the spinal cord.
stanford
linkden
github
goodreads
medium
twitterR code originally built to view forest fires in the west coast of the United States to use satellite data from VNP46A1 and other datasets collected from the Suomi NPP VIIRS satellite.
I then created higher-quality movies in MATLAB by using the VNP46A2 Black Marble dataset collected by the same satellite, which has reduced cloud and other artifacts due to additional data processing. This allowed me to quantitate a permanent reduction in nighttime lights within Ukraine (in line with my initial hypothesis) and identify a multi-stage reduction of nighttime lights in Kiev's outer neighborhoods/metropolitan area that was greater than that seen in the city core/center. This highlights the utility of public satellite data to quickly test hypotheses and visualize large-scale changes.
I will go over how the Black Marble dataset is collected and processed along with how I created the movies and the advantages/disadvantages of each data source.
Using this platform and codebase, in follow-up posts I will look at 2021 Texas power crisis during the winter storms, vegetation changes in deforested areas or after conservation efforts, and other events.
This can prove a useful reference for those new to calcium imaging (esp. in freely moving animals) or researchers who want to see how others perform certain experimental and analytical steps along with the rationale. Please reach out if you have any specific questions, happy to help!
The table can be sorted by column by clicking each header.
Also found as part of the Brain Initiative Notes post imaging analysis tools or https://github.com/bahanonu/imaging_tools.
This post can also be found on the PRF website:
This post can also be found on the PRF website: https://www.painresearchforum.org/forums/discussion/118414-2019-prf-naps-correspondents-blog.
This post can also be found on the PRF website: https://www.painresearchforum.org/forums/discussion/118414-2019-prf-naps-correspondents-blog#styles-2-0.
Find article on BRAIN webpage at Calcium imaging cell identification and fluorescence activity trace reconstruction, part 1.
Look forward to more postings!
NOTE! The ratings are a combination of how impactful the book was on my thinking about a particular topic or how well I think it was written/got its point across. Thus, at times whether I agree or disagree with the content/thesis/etc. of the book, it could still get 5 stars if the point it makes gets me to think about the subject in a new way or changes how I interpret the world around me.
How would the disappearance of streets affect the social fabric? This short story briefly (in castellano!) explores a world in which instantaneous, free transport is possible. Meant mainly to practice my spanish, i plan to follow-up with a more detail story in the future.
I really love the resulting notes and student feedback was quite positive. I thought sharing them might be useful for others in the future. The source latex files and raw images can be sent upon request (I'm considering making a Github repository in the future). I'll briefly talk about the document below and certain decisions that were made to get it to its current state.
A short story about God.