neuroscience imaging analysis tools: 2023 update

Summary

An updated resource that provides new and existing researchers a central location for methods and URLs for (calcium) imaging data processing and analysis tools.

This table also includes imaging data handling and analysis tools beyond calcium imaging and will be updated going forward.

Also found at https://bahanonu.com/brain/imaging_tools/ or https://github.com/bahanonu/imaging_tools.

Calcium imaging analysis with CIAtah (https://github.com/bahanonu/ciatah).
Imaging analysis tools, a table by Biafra Ahanonu, PhD

Imaging analysis tools


Updated: 13 September 2023 | Started: 01 December 2018

-biafra
bahanonu [at] alum.mit.edu

additional articles to journey through:

brain initiative notes
27 may 2013 | neuroscience

This is a continually updated collection of news, ideas/findings, and other tidbits related to the [...]n/' target='_blank'>BRAIN initiative, promising biotechnologies, and neuroscience/biology in general. This is a really exciting time in neuroscience and I hope to capture a bit of that here.

humanism in european art and society
06 january 2012 | essay

One of the main themes of the renaissance was the rebirth in the interest of classical themes or greco-roman culture. Many artist, eit[...]her through paintings, sculptures or architecture, portrayed this general movement by using Greek/roman themes, such as pillars, and integrating it into their works. But it wasn?t just an interest in greek/roman architecture or appearance but also their cultures.

An essay looking at various European paintings and how they were used to capture the essence of European culture, both old and new.

William Taft
10 August 2012 | designs

William Taft is one of the oft forgotten presidents. He was very effic[...]ient and a great problem solver, but this led to problems politically. He became a Supreme Court justice after being president.

state of sbsa: a review of 2017 and thoughts on future directions
04 june 2017 | sbsa

I spent the past year leading the Stanford Biosciences Student Association (SBSA) as President. This post consist of the letter to the comm[...]unity I sent out at the end of my term giving some highlights of the past year, those who have helped out, and thoughts on future directions.

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