Janelia Journal Club #1

Summary

Alyson Yee and I gave the first presentation of the Janelia Undergrad program. The paper tried to tease apart the different aspects of a songbird's appearance that most influenced behavior of other birds.

Throughout the summer at Janelia Farm, the undergraduates had to present at journal club. Alyson (another undergrad) and I presented at the first journal club. I designed the presentation and it can be seen below.

-biafra
bahanonu [at] alum.mit.edu

other entires to explore:

comp. neuro
30 november 2010 | science

Presentation I gave in 9.29, the computational neuroscience class at MIT. They attempted to build a model that could use the information ob[...]tained from recordings in the prefrontal cortex and other areas of a monkey brain to predict their behavior based on the 'state' their neuron groups were in.

powerpoint themes
10 august 2012 | design

Many default PowerPoint themes are too outlandish and graphics heavy for my taste. So over the last year or so, I have begun designing my o[...]wn themes for PowerPoint. I'll go over the design decisions behind a couple and provide links to download the themes.

dreams
02 july 2012 | essay

I have been recording down many recent and very old dreams in a Word document, which has swelled to over 7,000+ words and contains near one[...] hundred stories. The plan is to clean-up and compile all these stories into one novella that has several characters exploring the dream-worlds with some overarching story to tie it all together. Should be a fun experiment.

satellite-based videos: eastern europe during the russia-ukraine conflict
30 november 2022 | satellite

To visualize the nighttime lights of Eastern Europe, with a focus on times before and after the ongoing Russia-Ukraine conflict, I updated [...]my geoSatView R code originally built to view forest fires in the west coast of the United States to use satellite data from VNP46A1 and other datasets collected from the Suomi NPP VIIRS satellite.

I then created higher-quality movies in MATLAB by using the VNP46A2 Black Marble dataset collected by the same satellite, which has reduced cloud and other artifacts due to additional data processing. This allowed me to quantitate a permanent reduction in nighttime lights within Ukraine (in line with my initial hypothesis) and identify a multi-stage reduction of nighttime lights in Kiev's outer neighborhoods/metropolitan area that was greater than that seen in the city core/center. This highlights the utility of public satellite data to quickly test hypotheses and visualize large-scale changes.

I will go over how the Black Marble dataset is collected and processed along with how I created the movies and the advantages/disadvantages of each data source.

Using this platform and codebase, in follow-up posts I will look at 2021 Texas power crisis during the winter storms, vegetation changes in deforested areas or after conservation efforts, and other events.

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